rs51586445 SNP Detail

Summary

• ID
  rs51586445
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTTTAG CAGACCGGCG
  CAATGGCTGT GGCACAAGTC ATGCGTGCTG CGGGATGGCT GGCCTACTTT GCGTTGCTGC
  TTCCCTGGAA TAAAGCTGGA ACTACCAGGA GTAGGGAAAA TCGCCATCCA AGTACCTCTT
  TAGTGATGTC CCACTGAGAT GGAAATTTCA TTTGTTTGTT TTTAATAGCA GCAAGAGCTG
  K
  AATGTAGCTC AGTATATCAC ATATTTGCTT GCTATGAATG AAGCCTTGGG TGCGATCCCC
  AGCTATGGAT AAACTAGGCG TGGCTGTGCA TGTCTGCCGT CCCAGTACTT GGGAGGCAGA
  GATGGAAAAA TCAGAAGTTC AAGGTCATCT TTGGCTCTAC AGTGAGTTCG AGGCCAGCTT
  GTGGTACATG GGACCATGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135865113	ENSMUSSNP3455852	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320954693	CHEV_3_127202703	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51586445					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293434 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	435 bp upstream
Cpgi13791	CpG island 13791	376 bp distal
Rr584800	regulatory region 584800	294 bp distal
Tssr35576	transcription start site region 35576	747 bp upstream
Tssr35577	transcription start site region 35577	714 bp upstream
Tssr35578	transcription start site region 35578	692 bp upstream
Tssr35579	transcription start site region 35579	648 bp upstream