rs51586943 SNP Detail

Summary

• ID
  rs51586943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25421717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCAGGTG CTATTAGAAG CAGCCGGCAC GAGCCTCTGA
  AGGCTCCAGC ACCGGCTACT GTGTGCTTGT GCCCCCCTGT GTGCTGCCCG AGTAGCCTCC
  R
  TAGTCGTAGT TCCCGTAGTA TGGCGGCCAC TGGCTCTGGT TCTGATAGTA CTGGCTCCAC
  TGCTGGGCAT ACTGGGGGAG AGAACAAGAA TATCAAGTTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60979904	NES16140045	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51586943					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60979904	NES16140045	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25421717 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	within coordinates
Rr155556	regulatory region 155556	1717 bp distal
Rr155557	regulatory region 155557	1084 bp proximal
Rr160908	regulatory region 160908	684 bp proximal
Rr170211	regulatory region 170211	within coordinates
Tssr65169	transcription start site region 65169	593 bp upstream
Tssr71293	transcription start site region 71293	564 bp upstream
Tssr71294	transcription start site region 71294	564 bp downstream
Tssr71295	transcription start site region 71295	633 bp downstream