rs51587115 SNP Detail

Summary

• ID
  rs51587115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61736618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACACACA CACATGCATA
  CTTGTGCACA CACACAAACC TGTGCACATA AGGCACACTT GCATACTTGC ACACTCGCAC
  ACATGCACAC GCACCCACAA ACACAAGAAC ACAATAGATG TATATCTCTT GGCCCTGGGC
  ATATAAACAG CACTCACAAG TTACTTCCAT TCACTGTGTT CCTGCTGAGC ACAGGCAGCA
  R
  CCTCTCTCTA AGCTGCATAC CGATGTCCCT CATGGACACA ACACAACCCA CGGCCCCGTA
  TGCCTAGGGA TACAGGTCTG AATAGCTTGC CAGGTCCGTC ACACAAAGCC CTCGCAGGCC
  TTTCCAGTCT CACCCTTGCT GTCTGGTCTA GACCTTTCCA GGTGCTTCTC CCGATTAAGG
  AGCTGGGCAC CCCTCCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61280747	NES16780056	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51587115					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280747	NES16780056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61736618 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates