rs51587508 SNP Detail

Summary

• ID
  rs51587508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55516059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGATGGT TGTGAGCCAC
  CATGTGGTTG CTAGAAATTG AACTCAGGAC CTCTGGAAGA GCAGTCAGTG CTCTTAACCA
  CTTAGCCATC TCTCCAGCCC AGGAACAAAC TTTTTCAAAG AATGCTTCCC TTTACACATA
  TTGAAAGGCT AACCACTCAT TTTATTAATA TTCAGAAATG TTGGAGGTGG AGCCTTTGGT
  Y
  GGAAAGTATA TCACGCAGGA GAGGGACCGG ATATGATGAG ACAAGTGTCC TTTATAAAAC
  AGGACAGGAG ACAGTATGCT CCCTATCTCT CTGCTTTCTG ACACGTGGGC ACAGCAAAAA
  GATGGCCGTC TGCAAGCCAT GACTCGTCAG AGCACAAGTG TGTCAGGGCT TGAGCCTGGA
  CGTGCCACCT CCGGAATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806374	NES17743901	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51587508					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806374	NES17743901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55516059 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	1486 bp upstream
Rr369713	regulatory region 369713	1239 bp upstream
Rr480442	regulatory region 480442	207 bp distal
Rr480443	regulatory region 480443	338 bp proximal
Rr480444	regulatory region 480444	558 bp proximal
Rr480445	regulatory region 480445	1005 bp proximal
Rr480446	regulatory region 480446	1497 bp proximal
Tssr119942	transcription start site region 119942	1490 bp upstream
Tssr119943	transcription start site region 119943	1521 bp upstream
Tssr119944	transcription start site region 119944	1535 bp upstream