rs51588201 SNP Detail

Summary

• ID
  rs51588201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81334050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGGTG GATGACAGAC
  TGGTGTGCCC TCCAGGCCCC CTTTCATTCT TAAACACGTC AAGTTGCCCT CAAACAAATG
  GTGCAGGTCC ACCCCCATCC CAGCACACCC CCAAAGCACT GTATACCAGT GGGTATGACC
  AGGAGACACA TTACAGTAGC CTGGGCATTG ACCTGAACAC ATGTGACTAA GACAGAACCA
  Y
  AAAGCTCTGT CCTGTCCATG GCCTCGGACA TGGCACATCC CCTTTGCTGC CTGGGCGGGG
  GGGAGGGGCC CTTCAAGGCC CAGACTCACT GGCTCTGGCT CCAGCCACTC TCTGCCAAAC
  ATTCATCACG GGGAATTTTG TGGAAGGAAC CCGGGGCTTG CTGTCATGTT CTCAGTCACC
  ATCAGGCAAG GTTCTTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61292401	NES16908897	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51588201					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292401	NES16908897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81334050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1559 bp distal
Cpgi1994	CpG island 1994	304 bp proximal
Ncln	nicalin	1824 bp upstream
Rr402085	regulatory region 402085	1631 bp downstream
Rr435684	regulatory region 435684	1901 bp distal
Rr435686	regulatory region 435686	1334 bp distal
Rr435687	regulatory region 435687	1760 bp distal
Rr435688	regulatory region 435688	1185 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	within coordinates
Tssr98629	transcription start site region 98629	1892 bp upstream
Tssr98630	transcription start site region 98630	1829 bp upstream
Tssr98631	transcription start site region 98631	1380 bp downstream
Tssr98632	transcription start site region 98632	1406 bp downstream
Tssr98633	transcription start site region 98633	1434 bp downstream
Tssr98634	transcription start site region 98634	1470 bp downstream