rs51588426 SNP Detail

Summary

• ID
  rs51588426
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACTAGGA CTCTTCACTT TGAGGGTTGA GTGTGGTAGG
  CAGAGGTCCA TCCTGATTCT TATTCACCTA TGTTATTATT ATTAGGCGAT TTAAAACTCG
  M
  AGCTTCCCTC AACGTCCAAA CTGCAAGGGC AGAGGGAAGG CGGGGCTTGG GGACCTTCCT
  GGTCTCTCTT CTGCGCCTGC AGCGTGGAGC CTCAGGCTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136852120	ENSMUSSNP3940373	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323137457	CHEV_9_99777449	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51588426					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	560 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	306 bp downstream
Rr685463	regulatory region 685463	1302 bp distal
Rr685464	regulatory region 685464	871 bp distal
Rr685465	regulatory region 685465	370 bp distal
Rr685466	regulatory region 685466	753 bp proximal
Sox14	SRY (sex determining region Y)-box 14	860 bp upstream
Tssr91083	transcription start site region 91083	837 bp upstream
Tssr91084	transcription start site region 91084	818 bp upstream