rs51588460 SNP Detail

Summary

• ID
  rs51588460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79650885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA TCTAGGAACA GGAAAGCAAA
  R
  AGAACTCCAG CTGGGCTCCC GAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144782227	ENSMUSSNP5339188	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319808654	CHEV_1_79669743	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51588460					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79650885 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	1196 bp upstream
Cpgi464	CpG island 464	766 bp distal
Rr396122	regulatory region 396122	1587 bp downstream
Rr413837	regulatory region 413837	1207 bp distal
Rr413838	regulatory region 413838	706 bp distal
Tssr12441	transcription start site region 12441	1175 bp upstream
Tssr12442	transcription start site region 12442	1080 bp upstream