rs51588950 SNP Detail

Summary

• ID
  rs51588950
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38720485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC TAGAAGGAAT GCCAGTACCA
  T
  CTGGTTAATT TCTCTCAAAA GTGGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148266957	ENSMUSSNP1798112	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321518865	CHEV_5_38954381	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51588950					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38720485 () rs orientation: forward

Symbol	Name	Function Class
Gm57313	predicted gene, 57313	1001 bp downstream
Gm72219	predicted gene, 72219	235 bp upstream
Rr399063	regulatory region 399063	1163 bp downstream
Rr610564	regulatory region 610564	1518 bp distal
Rr610565	regulatory region 610565	1320 bp distal
Rr610566	regulatory region 610566	186 bp distal
Tssr46063	transcription start site region 46063	1217 bp downstream
Tssr50813	transcription start site region 50813	1971 bp upstream
Tssr50814	transcription start site region 50814	1520 bp upstream
Tssr50815	transcription start site region 50815	1502 bp upstream
Tssr50816	transcription start site region 50816	1462 bp upstream
Tssr50817	transcription start site region 50817	1410 bp upstream
Tssr50818	transcription start site region 50818	1350 bp upstream
Tssr50819	transcription start site region 50819	73 bp downstream
Tssr50820	transcription start site region 50820	102 bp downstream
Wdr1	WD repeat domain 1	Noncoding-Transcript-Variant