rs51589473 SNP Detail

Summary

• ID
  rs51589473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117102891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATGTAT GGGGTCTCAT
  TTCTCTCTTG AGAGCTGCTA AGGTCTAATA AGAGTAAGCT AAGTGTGTGT TCTCTTCTAG
  AAAGTGGAGG CCCTTGCTAT GCTTTGGGAT GGGCTCTCTG GCTGTAGAGG AAAGGGAGCC
  TTTCAGGAAG AATTGCAGAG GCCAGGAATT CTTAGGCAAT TGCTTAATGA TGTGAGAGAC
  Y
  GGGAAGTATC TACCATGGGT GTGGTGGTAC CGTGGACAGC AAAGGAGACA AGCAGCTCCC
  CCTGGAAGAC AGCAGTGTCT AGACAAACAT GATTGGCAGG AAGAGGAATA CCCCAGAGTC
  TTCTGTGTGG TGCCAGAAGG CAGGATGGCA TGGTGCACAG TGAGCCTCAG TCACCCCCTT
  TGGATCACTA AAGCAAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60932668	NES16192439	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	T
ss133580049	ENSMUSSNP4185836	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51589473					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932668	NES16192439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117102891 () rs orientation: forward

Symbol	Name	Function Class
D6Mit367	DNA segment, Chr 6, Massachusetts Institute of Technology 367	1301 bp proximal