rs51590345 SNP Detail

Summary

• ID
  rs51590345
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38104960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAACTGA AAAACAACGT
  GAGTCACACT AGAAGCAATG AAGAACAGAG TGGCTTCCCA GAGTTCTCTC TGACCCAACT
  CTTTCCAGAG GTGAGCCTTC TGCCCTGCTC ACCTCACGGG CCCTGGGCTG ACAGCCATTG
  GTTTGATGGT GTGGCCATTC ACTTCCTCTC TGGCTGCCAG TGCCTTGGTA GGCCATTTTT
  W
  AAGATCTTCT TGGATCTTAA AACCCTTTCT TAGGAAGTTA AAAACCAGTC TTTAATCTGG
  TCTTGACCTC TAAAAGTGCA ACCCCGCCAC AAATAAGTCT TCAACTCATA GGAAGATGGT
  GACTATATGT TTAATAAACC AAGTTTGGAA TCCCAAGCCT CAAACATCTT TCAGGGACCT
  TCAGTAAGAC ATACAGTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402411972	MGP_WTSI_19_38191002	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs51590345					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402411972	MGP_WTSI_19_38191002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38104960 () rs orientation: forward

Symbol	Name	Function Class
Rbp4	retinol binding protein 4, plasma	117 bp downstream
Tssr156244	transcription start site region 156244	238 bp upstream
Tssr156245	transcription start site region 156245	1803 bp upstream
Tssr159111	transcription start site region 159111	261 bp downstream
Tssr159112	transcription start site region 159112	300 bp downstream
Tssr159113	transcription start site region 159113	355 bp downstream
Tssr159114	transcription start site region 159114	1795 bp downstream
Tssr159115	transcription start site region 159115	1834 bp downstream
Tssr159116	transcription start site region 159116	1870 bp downstream
Tssr159117	transcription start site region 159117	1968 bp downstream