rs51593256 SNP Detail

Summary

• ID
  rs51593256
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27921261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAGTGG CCGACACAGA
  ACAGGGTTGG AGCTGCAGCT GCTGGGAGCT GGGTTTACCA GAATGAGACA CTGACCTCTG
  CCAGTCTCTT CCCTGATGCA AATGTCACTA CAGAACCTGC CCCGCTGAGC CCTGCTGGTC
  CTTGCCTGGA GAGAGGCCTT CAGTCACACC AGGCTTGGGG AGGCTGTGCT TTCCCCCACA
  G
  CTAAGAGTTT TGTACCCCTG ATAATACTGA TGCCTCAGAA AACTCTTTGC AAAAGACAAT
  GCAACTCTTC TCTCAGGGTG TCCATGGCAG CCTGCACCTA GTGGAGCAGA ATGGCTTGAG
  ATACTGGTGA CACAGTGGGA GCCACTTCCA GGGTGCCATT CATTCTCTTT CCCTGAGGCT
  GTTCCCAGTT TGTTGCGGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146392208	ENSMUSSNP2621423	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51593256					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27921261 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	540 bp proximal
Rr553712	regulatory region 553712	868 bp proximal
Tssr16891	transcription start site region 16891	806 bp upstream
Tssr16892	transcription start site region 16892	838 bp upstream
Tssr16893	transcription start site region 16893	1521 bp upstream