rs51594585 SNP Detail

Summary

• ID
  rs51594585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72567698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  TACACACCCT CCGAAAAAAT CCCATAGAGC TGAGGAATAC AGAGAGAAAA GGGGTTTTCC
  ATTTAAATAG CTTCCTCAAC TTGAGGTTAG ATATTGAACC ACCGGTTAAC CACTTCTGTC
  TTTTAAGTTC CTTTTAACTT CTGAAGCTAG TTTCACAAGG CCCTCCCCCT GCCTTCTGCT
  R
  CAAGAGAACA AGCACTCTCC CTTTCAGCAC ATGCAAGCTC CTGCCTACTT AGTTCTTCCT
  TATGAGTCCC ATTTAATGGA AAGAAGAACT GTGATTCGAA TACCAGGATT TGGAATTATC
  ATTATCAAAT GTTTCGGCTC ATAATCTCAT GGGGGATTTC TCAATGATCC GACTGCCAAT
  TTCAATTTCT TCCACCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136623033	ENSMUSSNP1721374	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51594585					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72567698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	1210 bp proximal
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	1930 bp upstream
Rr401510	regulatory region 401510	within coordinates
Rr682796	regulatory region 682796	within coordinates
Rr682797	regulatory region 682797	1440 bp proximal
Tssr86018	transcription start site region 86018	1565 bp upstream
Tssr86019	transcription start site region 86019	1985 bp upstream