rs51596437 SNP Detail

Summary

• ID
  rs51596437
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAAAGA AGTATTTTTT
  TAAAGTAGTT TAATCCGGGG GGGGCGGGGG GAGTGACACA CAGCCCTCAG GAGGCAGAGG
  CAGGCAGTTT TCTATGAGTT CGAGGCCAGT CTGGTCTACA TACCAAGTTC CAGGACAGGC
  AGAGCACCAC ACATTATTTA AAAAAAAAAA AAAAAAAAAA GCGTAAATCC GTTTCCCAGA
  A
  CCTCAGCATT CTCTTTGGAC AGAATGTGTC TACATTCAAG CTTACTGTTC TGTCTTCTGA
  GACAGAGTTA CTATGTAACC TTTGCAGGCC TCAAACTCTA GATCCTGCTG CCTCAATTTC
  CCAAGTGCCA GGTTGTGCTC AGTTTTTTTT TGTTGTTTTT TTTTTGTTGT TTTTGTTTTG
  TTTTTTTCGA GACAGGGTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147738288	ENSMUSSNP3645450	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51596437					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	325 bp distal
Cpgi2388	CpG island 2388	700 bp proximal
Rr224447	regulatory region 224447	47 bp distal
Rr224448	regulatory region 224448	352 bp proximal
Rr402345	regulatory region 402345	368 bp downstream
Rr402346	regulatory region 402346	425 bp upstream
Spryd4	SPRY domain containing 4	585 bp upstream
Tssr99849	transcription start site region 99849	604 bp upstream
Tssr99850	transcription start site region 99850	556 bp upstream