rs51596703 SNP Detail

Summary

• ID
  rs51596703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53616190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAATTG ATCATGTGAT
  TTTTAAAAAA AGATTTATTT TTTTTATTAT ATGTAAATAC ACTGTAGCCA TCTTTAGACA
  CACCAGAAGA GGGCATCAGA TCTCATTAGG GATGGTTGTG AGCCACCATG TGGTTGCTGG
  GATTTGAACT CAGGACCTTC AGAATGAAGA ACAGTCAGTG CGCTCTAAGC CATCTCTACC
  Y
  ACTAAGCCAT CTCATCAGCC CCGATCATAT GATTTTTAAA GAAACAATTC CCTACATTAT
  CAGCTTTCTT ACTTTGCTCT AGAACAAAGT ACTCTTCGAT CTCAAAAACT GGAAATACGC
  TTTAAATGTG ATTTAATCTC AACTATCCAA GGAATTCAGT TTCATTTACT TTTTTTCTGT
  AAGGCCAGTC GACTTTATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136502100	ENSMUSSNP5174384	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51596703					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53616190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21758	CpG island 21758	700 bp proximal
Rab39	RAB39, member RAS oncogene family	within coordinates
Rr401371	regulatory region 401371	1329 bp upstream
Rr679060	regulatory region 679060	855 bp proximal
Rr679061	regulatory region 679061	1332 bp proximal
Tssr89614	transcription start site region 89614	1321 bp downstream