rs51596864 SNP Detail

Summary

• ID
  rs51596864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116242447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTCTAA AATCAAGCCT
  ACTCCTTAGG GATTTCAGAG TTAAATGATA GAATCAGTTG AAAGAATTAC CATAATGCCT
  GCCATGGCCT GAGCAGTAAA TGCCAGATGC TGTTATTGGA GATAGCAATT GGTATTAGGC
  TAAAGGAAGC TGTTTAGCTG GTTGCTCTAA TGAACACATT TAGATGGGTG GATAAAGTAG
  Y
  CAGGGGTTTG GAAGCTTGCC CTTGCACATG TTAGGTGAGC ATCCTACGAC TGAGCTACAT
  CGCCAGTCCT ATGTCCTATC TGTTGATCAT TTGGCATCAA TAATTCTTCA TTGTGTATGT
  GGGAGGGGGC TGTCCTGCAT ACCGTAGGGT GGCTAGTGCC ATCCCCGACG TACAGCCATC
  ATATCACCTC TTTGCAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60437226	NES15944154	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	C	T	C		C
ss320895034	CHEV_3_116151716	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51596864					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437226	NES15944154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116242447 () rs orientation: forward

Symbol	Name	Function Class
Gm22361	predicted gene, 22361	234 bp upstream
Gm66091	predicted gene, 66091	within coordinates