rs51597149 SNP Detail

Summary

• ID
  rs51597149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37229406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCAATG GCTGCCTTCC
  CTGGCATTCA TTAGTCCCTT TATAAAGGTG ACTTCTGGGG GTAGTGGGTG GAGAGGCTTG
  ATAGTGCCAA ACCCACTCTG TGCTACTTAG ACAAATAAAC AGAAATTCGA AGTCTGCAGA
  ATAACAGTCA GACAGTATGT CTGCTGATTT TTTTTTCTTT GTTTTGTTTT TTTCCTGTTC
  R
  GATCTCTTGA GACTCCCCAG CTATGATTCT TGGTTCAGAG ATCGAATCTA CACAGTGAAG
  AACACTAAAT AAACACATAC TCAAATACGT TACTAATGAG TTACAGTAAT TTGGCTTGGT
  GAGTCATTCA GTTTGTGAGT TGCTGACTGT TTACATCCAT TTGGATCATG CTGCACACTC
  ACTGGCCCCT CACTTTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61768038	NES17688998	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51597149					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768038	NES17688998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37229406 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	6 bp distal
Rr279043	regulatory region 279043	88 bp distal
Rr283270	regulatory region 283270	195 bp proximal