rs51597910 SNP Detail

Summary

• ID
  rs51597910
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29266076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACAGGT GTTTTGCCTG
  TGTGTGTCTG TGTGCTGGTG CCTACAGAAG CCAGAAGAGG ATGTTGGATC CCCTAGAACT
  GGAGTTACAT ATGGCGCCAC CATTTGGGTA CTGGAGATCA GACAAATACT GGTTAGTTGT
  GTTGTAGAGG ATAATGAATA GGTGAGGGAC AAATGCTACA CCTGTAGAGG TCAGTCCAAC
  W
  CTGGGGACCA GACTCAGGTG GTCAGACCTG GGCCAGCAAG CATATTTACC TGCTGAGCCA
  TCTCACTGGT CTACACCCCC CACGCATACT TTTTTTTTTT TTTTTTTTTT TTTTGGTACA
  GGGTCTTTTT ATGTAGCCCA GGCTAGCCTT GACTTTATGT AAACCTTGAA CTTGACAGTG
  AGCCTTCTGC CATTGTCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559288	NES16575662	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51597910					SNP	A	A	A	A	A	A	T	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559288	NES16575662	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29266076 () rs orientation: forward

Symbol	Name	Function Class
Rr524769	regulatory region 524769	442 bp distal
Rr524771	regulatory region 524771	within coordinates
Rr524772	regulatory region 524772	3 bp distal
Rr524773	regulatory region 524773	620 bp proximal
Rr524774	regulatory region 524774	1074 bp proximal
Rr524775	regulatory region 524775	1497 bp proximal
Tssr143492	transcription start site region 143492	113 bp upstream