rs51598859 SNP Detail

Summary

• ID
  rs51598859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20986155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCTCCC TGGTTATTGA
  GCCCAGAAAA CTTCCAGTAC CTCTGGTTTC TCTCAGCAGA CAATGCTGGG AATAGAGCCA
  GTTGTCTTAC CCCAGGGTCA AATGATCCCA TGCAAATGTA GCAACTTCTT ACTCTGATAG
  ATCTCTATCA GTGGGAAAGC AGGATTTAGT AGCCATTCTG GGCGGATATG TGTGTGTGCT
  Y
  GTCAGTTTGA CAGGAGTTAG GATCATCAGG GAGAAAGGAG CCTCGGCTGA GCAACTGCCC
  CTGTGAGATC CAGCCGTAAG GCATTTTCTC AACTAGTGAT CAATGTGAGA GGGCCCCGAC
  CCATTGTGAG TGGTGCCATC TCTGGGTTGG TGGTCCTGGG TCCCGGGTTA TAAGAAAGCA
  GGCTGAGCAA GCCAGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss148726298	ENSMUSSNP5659324	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs51598859					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20986155 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	391 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	1909 bp upstream
Tssr6059	transcription start site region 6059	1925 bp upstream