rs51600288 SNP Detail

Summary

• ID
  rs51600288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76475834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAAGA GAAGAGAAGA
  GAAGAGAAGA GAAGACAGAG ACTTGGAACA TGTCTCACCC CGCTAACAGA CACCTTAACC
  TTGGACTTAG ACATTCGGAG CTGAGACGAT GTGTTCTTGC TGTTTAAGTC TTTCAAGCTC
  TGGTACTTTT TTGCTGTGGC TCTAGCAGGC AACACAATGG CTCTAAACTA GCACTTTATG
  R
  CTGAGAGACC TTGGACCTGA GCCCTTGAGA GTTGTGGACA TCTAGTCCAT GAGAACATAA
  GGCTGATACC AGCATCTCTG TCCACACCAC AGTCGTGAGC ATGCTCTGTG CACTTCATCA
  CAGGCTGGAA ATAACACCTG GTGAGCGTGT TCTGTGGCAT GTGACGAGAC ACATGTGCCT
  TCTGGGTGGT CTAACCGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63183965	NES17459493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51600288					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183965	NES17459493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76475834 () rs orientation: forward

Symbol	Name	Function Class
Rr347326	regulatory region 347326	1834 bp distal
Rr347327	regulatory region 347327	967 bp proximal
Tssr151998	transcription start site region 151998	292 bp upstream