rs51600989 SNP Detail

Summary

• ID
  rs51600989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACACTG AAGTCACAGT
  GTGGCTGCCA CACCCACATT TTATATGGTG CTGGGGTTCA GAACTCAGCC ATTCATCCTT
  GTGCAGCCAG GGCCTTCCAC TGAGCCTCCT CAGTCCCTTC TTATCTTTGT CCCTTTGAGA
  CAAGGTTTTA CCTTGTAGCC CAGGCAAGTC CCCAACTCAC AGCAACCTCC ATGCCTCAAT
  Y
  TTCGTATTCC TGGGGTTACA AATACGAGCC ACCACAGATG GCTTTAAATT GGAACGCTGT
  TAGGTAAACC ATGTTTTATT CTAATTTCAT TATGGTATAT TGTAATGAGT ACAAAATTTA
  AGGTAAGAAA ATTCAAAGTC ACTAAGGGTT TGTTGTTGCT GCTGTTGCTG TTTCATTTTG
  TTTGTTTGTT TGTTTGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135862689	ENSMUSSNP216683	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320953870	CHEV_3_127112907	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51600989					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203638 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1074 bp distal
Gm52631	predicted gene, 52631	within coordinates
Tssr35571	transcription start site region 35571	1102 bp upstream
Tssr35572	transcription start site region 35572	1008 bp upstream
Tssr35573	transcription start site region 35573	981 bp upstream
Tssr35574	transcription start site region 35574	946 bp upstream
Tssr35575	transcription start site region 35575	925 bp upstream