rs51602415 SNP Detail

Summary

• ID
  rs51602415
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84107204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACCTAG TCTGCATGTC
  ATTTGACTGT GCTCTGTCCC CTGAGTGCAA AACGGGGGCG TGCACCGGCA ATTGAGCCAA
  GGTTGGGCGG GGGCATGGCT GCATTTGCCT GAATGCATTG CAGACATTCG GGTGGCACAC
  TAGTTGTTGC CAGATCTGAC TTTTCTACCC CAGGCTTCCC ACCTTAATGA TTTTCCACAT
  C
  GCTAATCTTT ATTAAGGGGT GAAGTGGAGG AAGTGTGGGA CTTTACTGTG CTCAGTTCAG
  GTCATACCAC ACTGAGGTCT GCTGGGAGCA TCCTCTCAAT GCTGGACTGT GGGGGGGGGG
  GGTTCCTCTG TGCCATTTCG AAGGTCCCAG CCCGGTGTGT TGGAAGCTGG ATAAAATTCC
  GGAAGAGGGG AGTTCTGGTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147631363	ENSMUSSNP5776473	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs51602415					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84107204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10337	CpG island 10337	80 bp distal
Gm58899	predicted gene, 58899	1184 bp downstream
Ptgr3	prostaglandin reductase 3	within coordinates
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	within coordinates
Tshz1	teashirt zinc finger family member 1	1373 bp upstream
Tssr152202	transcription start site region 152202	1392 bp downstream
Tssr152203	transcription start site region 152203	901 bp downstream
Tssr152204	transcription start site region 152204	873 bp downstream
Tssr152205	transcription start site region 152205	836 bp downstream
Tssr152206	transcription start site region 152206	386 bp downstream
Tssr154126	transcription start site region 154126	1363 bp upstream