rs51602739 SNP Detail

Summary

• ID
  rs51602739
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAT AATAAATAAA TAAATCTTTT
  A
  AAAAAAATTG TGTGTGAAGG CTGGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132549603	ENSMUSSNP3760895	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323783673	CHEV_11_88858866	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51602739					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1545 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	1713 bp upstream
Rr454272	regulatory region 454272	969 bp distal
Rr454273	regulatory region 454273	626 bp distal
Rr454274	regulatory region 454274	50 bp distal
Rr454275	regulatory region 454275	988 bp proximal
Rr454276	regulatory region 454276	1760 bp proximal
Trim25	tripartite motif-containing 25	1824 bp upstream
Tssr104062	transcription start site region 104062	1833 bp upstream
Tssr104063	transcription start site region 104063	1890 bp upstream
Tssr110060	transcription start site region 110060	1792 bp upstream
Tssr110061	transcription start site region 110061	1019 bp upstream