rs51602866 SNP Detail

Summary

• ID
  rs51602866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74111027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTATCT TGGTGTGCAC
  ATTCTTCCAT GCCTGTTCCC ATCATACATT TCACGATCTA CCATTTTGGA TGTAGCTCTG
  CCAAAATCTT TACACTGCTC TGGATTGTTT TTAAGAAGGC TTTTTATGTG ACCTCAAATG
  CCTTCCAGTC TTCTCTCAGC TCATCCTTGA AGAGACATCT CACAGCCATG TTTCCTGTAA
  Y
  GCCTTCAAAT TGACCACGAA AAAAGCAAAA GATGGTTCTG CTTGCTTGCT TGCTTTTTTT
  TTTATTCTTA TTTTTATTTA ATTTAATTTT TTTTTTTTTT TGAGACAGGG TTTCTCTGTG
  TAGCCCTGGC TATCCTGGAA CTCGCTTTGT AGACCAGGCT GGCCTCAAAC TCAGAAATTT
  GCCTGCCTCT TTTCGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60279641	NES15784988	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51602866					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279641	NES15784988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74111027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	644 bp proximal
Ehd3	EH-domain containing 3	809 bp upstream
Rr530824	regulatory region 530824	319 bp proximal
Rr530825	regulatory region 530825	608 bp proximal
Tssr145810	transcription start site region 145810	796 bp upstream
Tssr145811	transcription start site region 145811	822 bp upstream
Tssr145812	transcription start site region 145812	851 bp upstream
Tssr145813	transcription start site region 145813	870 bp upstream
Tssr145814	transcription start site region 145814	913 bp upstream