rs51608570 SNP Detail

Summary

• ID
  rs51608570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133066 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A AAGCATGAGG TAGTTTAATG ACAGAGCTCC GGGCCGACAC
  ATATCTCCCA CAGGAGACAG AGGTGTCGAC CACATGGTGG AGCCATAATG GCGGAGCTCC
  R
  GTTCGAAACG TATCTCACAC AGGAGACAGT GGTTTCGACC CCGAGGCTTG GAAGCTAGGG
  ACTTTTATAG AAAAGGGGTG GGGCTGGGGG AGGAATTGGT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139083803	ENSMUSSNP6125539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51608570					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133066 () rs orientation: reverse

Symbol	Name	Function Class
Gm4275	predicted gene 4275	1835 bp downstream
Gm57247	predicted gene, 57247	within coordinates
Gm72045	predicted gene, 72045	1833 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	1190 bp downstream
Rr153982	regulatory region 153982	1066 bp distal
Rr153983	regulatory region 153983	466 bp distal
Rr153984	regulatory region 153984	within coordinates
Rr153985	regulatory region 153985	1935 bp proximal
Rr169359	regulatory region 169359	535 bp proximal
Rr169360	regulatory region 169360	1869 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	23 bp downstream