rs51609305 SNP Detail

Summary

• ID
  rs51609305
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79659513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGTCCC TGGTTCTCAC
  GAACCCTGAA AAGGACATTA ATGTTTGAGG TGATTGATCG ACCCAGGACT AACAAACGAC
  CCTTGTCGGG AGATGGAGGC CTTGAAGGGA CCCTTTGTAG CCCACAGGGC TTCTTCGGAC
  TGGCTGGTAG GAGACCTTGA GACCCCTGCT GGATTTGGAG TGTCAGATCT ACAGCCAGTG
  K
  GAAGCATCTA TAGAATGCTT GCTGTATGAC CAGGCTCCTA GAGCTGAGTT AGGTTTTATC
  GTTGTTTTCG TTATTATTGT TTTTGGTTTT TGGAGTCAGG GTCTCCCTAT GTAGCCATGG
  CTGGCCTAGA ACTCACAGAT ATCCTCCTGC CTCTGCATCC CACTGGGGCA AAAAGAGTGG
  GCCATTATAT CCAGCAGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386570	NES15268677	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51609305					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386570	NES15268677	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79659513 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr225117	regulatory region 225117	within coordinates
Tssr94403	transcription start site region 94403	1000 bp downstream
Tssr94404	transcription start site region 94404	909 bp upstream
Tssr94405	transcription start site region 94405	994 bp upstream
Tssr94406	transcription start site region 94406	1025 bp upstream