rs51609366 SNP Detail

Summary

• ID
  rs51609366
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA GATTACTTAT TTACTGAAGA
  T
  GTTTTCAAAT CGATGTCATC ATTTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148892288	ENSMUSSNP6477053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs51609366					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cage1	cancer antigen 1			Intron
				Noncoding-Transcript-Variant
Cpgi5461	CpG island 5461			667 bp proximal
Riok1	RIO kinase 1			1058 bp upstream
Rr369679	regulatory region 369679			1409 bp upstream
Rr477625	regulatory region 477625			518 bp proximal
Rr477626	regulatory region 477626			976 bp proximal
Rr477627	regulatory region 477627			1122 bp proximal
Tssr119342	transcription start site region 119342			1298 bp upstream
Tssr122123	transcription start site region 122123			953 bp downstream
Tssr122124	transcription start site region 122124			988 bp downstream
Tssr122125	transcription start site region 122125			1146 bp downstream
Tssr122126	transcription start site region 122126			1228 bp downstream
Tssr122127	transcription start site region 122127			1982 bp downstream