rs51609749 SNP Detail

Summary

• ID
  rs51609749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52208704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAAGGC ACTCCTGCTT
  ATAATCTTCA TATTTTGCTA GAGCAGAGAA AAATACATTT ATACTTCTTT TTAACTGCGA
  AAAGCTGGCC ATAAAAACAG CTGGATTCAT GTGTGAAAAG GAAAGCAGTG AGCTCTCAGG
  AGCCAGGGGT TTTAGGAAAG GAATATGTTT GGGCAGTTCA GTACTGCTGT GTGCATTTCA
  Y
  TATTGTTATA TGCATTTCAC TATTGTTTTG TGCAGTTCAC TATTGTTGTG TGCAGTTCAC
  TATTGTTGTG TGCAGCTCAC TATTGCTTTG TGCTTCTTTA ATATATTTCT ATTCTGATGT
  TACACTCAGT TTGTTTACAA ACTTGGTCAC TCATCCTGAA ACCTAAAATG TCCTTCCCAG
  CTTTCCCAAG AACATCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60261856	NES15764135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51609749					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261856	NES15764135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52208704 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	1297 bp proximal
Rr342130	regulatory region 342130	1905 bp distal