rs51610769 SNP Detail

Summary

• ID
  rs51610769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA CCTCCCAAAT GCCGAAATTA
  K
  AAATGTATAC TACCATGTCT AGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147246252	ENSMUSSNP7113330	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325639834	CHEV_18_60687057	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51610769					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	682 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	976 bp upstream
Gm58903	predicted gene, 58903	1019 bp downstream
Rr351670	regulatory region 351670	1316 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	1169 bp downstream
Tssr153448	transcription start site region 153448	1417 bp upstream
Tssr153449	transcription start site region 153449	1324 bp upstream
Tssr153450	transcription start site region 153450	1300 bp upstream