rs51611090 SNP Detail

Summary

• ID
  rs51611090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52649273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGTGG AGAAGTCTTC
  ATCCCGACTG GGTAAAGGCT TTCTAGGCGT AACTTGGGGG GATGAACACC CTGGCTCTGT
  GAGCAACTCC TCCTTTACGT CATAGAAGGA AGCTCAACTC ACCATTCCCT CCGCAGAGTG
  TCCTTTGGAG GACTCTTCTG TTTGCTGCTG GAACAAGGAT AGGCCTTGTC TGTCTGCTCA
  R
  GAGAAGGAAT TTTAGCTGAC TAGCCTAGGC TGGGCTTGTA TTCACTATGT AGGGAAATCT
  GCCCTTGAAC TTCTAGTTCT TCTCTGTTTC CCACCCAAGT ACTGGGATTA CAGGCAGGTG
  CCACACCACA GCCGACTAAT GGTGATAATT ATAAGCACAC AGGAAAACCT TTGCCCAGAC
  TTCATTCTGA GAAATACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424045	NES15399324	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51611090					SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424045	NES15399324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52649273 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	168 bp upstream
Cpgi4596	CpG island 4596	484 bp proximal
Gm23296	predicted gene, 23296	1995 bp downstream
Gm24859	predicted gene, 24859	1298 bp upstream
Gm59577	predicted gene, 59577	1935 bp downstream
Rr387217	regulatory region 387217	1964 bp downstream
Rr403283	regulatory region 403283	1163 bp upstream
Rr403284	regulatory region 403284	1926 bp upstream
Rr466025	regulatory region 466025	183 bp distal
Rr466026	regulatory region 466026	within coordinates
Rr466027	regulatory region 466027	1864 bp proximal
Tssr116285	transcription start site region 116285	142 bp upstream
Tssr116286	transcription start site region 116286	119 bp upstream