rs51614571 SNP Detail

Summary

• ID
  rs51614571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16239019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCCTTT CTTGGGGTGG
  TGCCAATTAA AGAACATTAC AATGAGCTAT ATATTTGTAA CGTTTTGTAG TGCCGGAAGT
  GACACTAAAT ACAATTACAC TTCCTGCTTT TTTTTTTCTT CCCCGTTCCC CAGTAACTAA
  GTACTACTTA AAAAATAAGA TCTGTAATAG CCCTTTAGGT GAAGATTTAT TGTTTCTATT
  R
  ATGCTTTCAA TGGTTTTCCT GGGATTTTAT GTGCCAAGGC TGGTTAATTA GAAATAATAG
  TGCTCTGTCC AGAATAACTT TCTTCATGCC ACACTACATT TTATATAAGA GTTTATATAT
  GCCAGATACA TTGTAGTGTG TTAGTTAACA AACTATTTTA ATTAATGTTT TATTTCAGCA
  TATGAACATC TAGGAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134642379	ENSMUSSNP2497363	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51614571					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16239019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			932 bp distal
Gm64384	predicted gene, 64384			1137 bp upstream
Rr397612	regulatory region 397612			1570 bp downstream
Rr573790	regulatory region 573790			1609 bp distal
Rr573791	regulatory region 573791			1148 bp distal
Rr573792	regulatory region 573792			647 bp distal
Tssr833	transcription start site region 833			1237 bp upstream
Tssr28473	transcription start site region 28473			1649 bp downstream
Tssr28474	transcription start site region 28474			1575 bp downstream
Tssr28475	transcription start site region 28475			1547 bp downstream
Tssr28476	transcription start site region 28476			978 bp downstream
Tssr32661	transcription start site region 32661			1168 bp upstream
Tssr32662	transcription start site region 32662			1011 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant