rs51615178 SNP Detail

Summary

• ID
  rs51615178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTATTA ATTTACAACA
  CTTTAGAAGT ATAATATCAC TTTTCTCATT AATGTATGTA TTCATTTTAT ATCCTGATCA
  CAGCCCCCCA GCCCCCTTCT AACCCTCATA AGTTCCTCTT CCTATTATCC CTTCCTCTTC
  TCCTAAGGGG AAGCCCCCCT TGTATACGGC CCTGCCCTGG GACACCAAGT AGAAGCAGGA
  M
  TGTGTGTGTC CTCTCCCATT GAGGTGCAAC CTGGCAGTTC AGCTAGAGGA AGGGGAGGGT
  TCCAATGGCA GGCAGCTCAG TCAGAGATAG CCCTGACATA GTTGTTAGGG GAGCCACATG
  ACGACAAAGC TGCACGTCTG CTATAAATGT GTAGGGCACC TATGCTGGCC CATGCATGTT
  CTTTGTTAGT GGTTCAGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136423328	ENSMUSSNP6003705	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51615178					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039234 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1210 bp distal
Rr678057	regulatory region 678057	252 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	699 bp downstream