rs51617939 SNP Detail

Summary

• ID
  rs51617939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89584781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATATA TAAATGAGAC
  CTGCTGAGTC CATTTACTGT TGTTTGTACA ACTTAATTAA AACATAATTT AAATAAAACC
  AATTCCCTGT CAACTGACTT TAGATTAGAC AACATTTTCA TGAAAATGTT TTATTAATGC
  TTTAGGTAAT AAATGTAATA TCTATGTATA TGACAGAAAA CATAAAAGTA TAACATATTA
  Y
  TTTGAGATAT ATGGAAATGT CCTTTATGTG AGTATAATCC AAGCCTCTTC ACTTTTTGCT
  TATCTCATTG CTGCCTATGA ATTTATCAGT TCAATCATTA TTTATAAAAA ATACTTTTAG
  TTCTGGCAAC GTTCTGCTTT CTTATATAGG CAACTGACTT TCTAATCACT TTTCTCAGCT
  TGCTTGTAAG TCATATGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61194601	NES16707710	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51617939					SNP	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194601	NES16707710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89584781 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr51705	transcription start site region 51705	1865 bp upstream
Tssr51706	transcription start site region 51706	1334 bp upstream
Tssr51707	transcription start site region 51707	1274 bp upstream
Tssr51708	transcription start site region 51708	1343 bp downstream
Tssr51709	transcription start site region 51709	1520 bp downstream