rs51618046 SNP Detail

Summary

• ID
  rs51618046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGGCC TGGATGGAAG
  CTGAGTTGGT CAGCTTTTTG CCCAGGCGAG GGGTAGGGCC AGCTCTTCCA GTTGCTGCAT
  CTGATGAGAA ACAGGGCCAG CTCTGCACAG CTCTCAGATG TCAACATGGC TTCAGGTGAC
  AGTCTAGACC AGGGATGTCT ACATCAGAAG CATACTTTTT ATAATCTTAC AGATTCACTA
  Y
  CTCAAATTTA AAATGTCACA TATTTTAAAA ATAATTGCAA GGATAGTTGA CGAAATACTC
  ACTGAGAACA TTGATTTCAG ACAAAATCAT TTTCCTGTGA CCCTTCACAT TTACAGAATT
  GGGAGGTGCT ATTTGAGCAG AATTATAATT TAATAAGTGC AGAGACAGAG TTCTGTTTAT
  CTTTGGGTAT CTATCTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647239	ENSMUSSNP657969	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss322398747	CHEV_7_117910134	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51618046					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365827 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1586 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	57 bp downstream
Cpgi19579	CpG island 19579	1463 bp proximal
Rr653308	regulatory region 653308	1173 bp proximal
Rr653309	regulatory region 653309	1801 bp proximal
Tssr68503	transcription start site region 68503	1443 bp upstream
Tssr68504	transcription start site region 68504	1486 bp upstream
Tssr68505	transcription start site region 68505	1518 bp upstream
Tssr68506	transcription start site region 68506	1549 bp upstream
Tssr68507	transcription start site region 68507	1995 bp upstream