rs51618562 SNP Detail

Summary

• ID
  rs51618562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121380723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG TATCTCATTC AAAATGTTAT
  R
  TATCCTTAAA TTATCCAGAA ATATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147390406	ENSMUSSNP5463271	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320483658	CHEV_2_121375978	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51618562					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121380723 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	within coordinates
Rr563848	regulatory region 563848	1099 bp proximal
Tssr25942	transcription start site region 25942	621 bp upstream
Tssr25943	transcription start site region 25943	1022 bp downstream
Tssr25944	transcription start site region 25944	1035 bp downstream
Tssr25945	transcription start site region 25945	1111 bp downstream
Tssr25946	transcription start site region 25946	1141 bp downstream