rs51618941 SNP Detail

Summary

• ID
  rs51618941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98177349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAACTCA AAACAGATGA
  GTGGTCGAAA AGGAAAAGAC ATTAAGAATT GTATTTGAAG ATGTTCCCTC ACACCCTGGG
  CCAAGTTTCT GGGAGCCAGA TAAATTGAAC TTGCAAGGGT TAGCTGAAAG TCTCGCCTGC
  ACACCATGTG TGAAAGGGCC ACCTTGAGAC GTTTAAAATT CAACATTTTG ATTTCGGGAA
  M
  GATTTCCCAT GAGAAGGGTT TTAGAACAGG GAAACCCGGC TGTTTGTTCG ATTTCCTTTC
  CAATGCCAAG AAAGGTACGA TGGGGAGACA TACCTCACAA ATCTCTCTGT CAGCTGGTGG
  ACAAAATTAT AAATTTCAAT CCAGTTATTT GCTACACTGC CAGACCTGAA AAAGGAAGAT
  AAATTGATCA GAAAGACAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199553	NES16709288	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51618941					SNP	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199553	NES16709288	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98177349 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	886 bp proximal
Gm42759	predicted gene 42759	1160 bp upstream
Rr615101	regulatory region 615101	1533 bp distal
Rr615102	regulatory region 615102	1167 bp distal
Rr615103	regulatory region 615103	1462 bp proximal
Tssr1554	transcription start site region 1554	1462 bp downstream
Tssr47433	transcription start site region 47433	1205 bp upstream
Tssr47434	transcription start site region 47434	1235 bp upstream
Tssr47435	transcription start site region 47435	1605 bp upstream
Tssr47436	transcription start site region 47436	1774 bp upstream
Tssr47437	transcription start site region 47437	1809 bp upstream
Tssr51988	transcription start site region 51988	1080 bp downstream
Tssr51989	transcription start site region 51989	1127 bp downstream
Tssr51990	transcription start site region 51990	1140 bp downstream
Tssr51991	transcription start site region 51991	1237 bp downstream
Tssr51992	transcription start site region 51992	1307 bp downstream
Tssr51993	transcription start site region 51993	1480 bp downstream
Tssr51994	transcription start site region 51994	1504 bp downstream
Tssr51995	transcription start site region 51995	1647 bp downstream
Tssr51996	transcription start site region 51996	1807 bp downstream
Tssr51997	transcription start site region 51997	1845 bp downstream
Tssr51998	transcription start site region 51998	1885 bp downstream
Tssr51999	transcription start site region 51999	1920 bp downstream
Tssr52000	transcription start site region 52000	1941 bp downstream
Tssr52001	transcription start site region 52001	1961 bp downstream
Tssr52002	transcription start site region 52002	1981 bp downstream