rs51619051 SNP Detail

Summary

• ID
  rs51619051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGGTAG GGGGACCGTG
  ATTTGTACCT GTTGTGTTGG TTCCAGAAGC CCTGTTGCTA ACCTAGTTAG TGTTGTAACT
  CCTGCCCCAT CTAAGTTATC CCTAAAGATG GAGCTGCCTT GTAGATATTT TGGCTCAGAT
  GGTATAAGCA GTACATTTAA TGCTTAAAAT ATTTTCATAA GCAACCGGGG GGTGAAGGGA
  R
  TGACTCACTT GGTAAAGTGT ATGCTGTGCA GACATTAGGA CCTGAGTTTA GACACCCAGC
  ACCTACATCA GGGAGCAATC CATGCCTGTA ATTCCAGTGG TCAGGGTCGG GGAGGGGGAA
  CCAGGAAGAT CCTGGGGCTC TCTGGCTAAA TCAGTGGGCT CCAGGTTCAC TGGGAGACCC
  GGGCTCAAAA AGTAAGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132681492	ENSMUSSNP2277602	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss323821011	CHEV_11_96405345	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51619051					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434857 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	258 bp distal
Rr252639	regulatory region 252639	1745 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1597 bp downstream
Tssr104543	transcription start site region 104543	688 bp upstream
Tssr104544	transcription start site region 104544	1342 bp upstream
Tssr104545	transcription start site region 104545	1395 bp upstream
Tssr104546	transcription start site region 104546	1403 bp upstream
Tssr104547	transcription start site region 104547	1445 bp upstream
Tssr104548	transcription start site region 104548	1539 bp upstream
Tssr104549	transcription start site region 104549	1552 bp upstream
Tssr104550	transcription start site region 104550	1610 bp upstream
Tssr104551	transcription start site region 104551	1638 bp upstream
Tssr104552	transcription start site region 104552	1659 bp upstream