rs51619344 SNP Detail

Summary

• ID
  rs51619344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83081935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCAAA GAATAAAGAA
  AGATGTCTTT GAGAATACAA AAGCCTTTAT TTCATAAGAA AAAAAATTAT CTCTAAAGCT
  TCCCCACAGC CGGTCCTCCA GACTTTCCAC CAGGCTTTGC TTGAACATGG ACGAAAGTAC
  ACACACCTGG AATTCCTTTT TCCTCTTTTT ACAAGATCCA GGAAGTGAAT TCTTATTAGT
  Y
  AAACCCAACT CAAACACATC ATAAATGATA CTTGTATCAT TTATGGAATT TGGGAACTAT
  GCATATTTAT AAGCATGAAT GCTGCAGCCC AGTGATGTCT ATTGGCTTGC CCCTAGTGAG
  TTATCAAGTA ATCGAGCTTT AAAGCTGTTT AGCCCATAAT CCACACCATT CAAAACACAC
  AGAAAGTGGT TACAGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145303329	ENSMUSSNP231984	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322735759	CHEV_8_84879205	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51619344					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83081935 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	1884 bp upstream
Tssr81944	transcription start site region 81944	1826 bp upstream
Tssr81945	transcription start site region 81945	1775 bp upstream
Tssr81946	transcription start site region 81946	1722 bp upstream
Tssr81947	transcription start site region 81947	959 bp upstream
Tssr81948	transcription start site region 81948	859 bp downstream
Tssr81949	transcription start site region 81949	1708 bp downstream