rs51619967 SNP Detail

Summary

• ID
  rs51619967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34503952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGAGTAAAA ACCCTTGTCA ACTTGAAGCC TGAGGGATCT
  CCAATGTCAC AAGCAAGCGC ATCATGTCAG CAGCTGGCCT TTTTCCAGAA CAACAAACTT
  Y
  TAAAAACAAA TCTGGAAGAC TAGCCAGGGT GACACTGCCT ATAACCTTAG CACTGAAGGA
  GATCGAGGTG GAGACAGAAG TTTAAGGATA TCCTTGGCTA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146939486	ENSMUSSNP3703008	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51619967					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34503952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	1525 bp proximal
Reep5	receptor accessory protein 5	within coordinates
Rr352680	regulatory region 352680	648 bp proximal
Tssr152789	transcription start site region 152789	140 bp downstream
Tssr152790	transcription start site region 152790	943 bp downstream
Tssr152791	transcription start site region 152791	1065 bp downstream
Tssr152792	transcription start site region 152792	1146 bp downstream
Tssr152793	transcription start site region 152793	1545 bp downstream
Tssr152794	transcription start site region 152794	1592 bp downstream
Tssr152795	transcription start site region 152795	1602 bp downstream