rs51620668 SNP Detail

Summary

• ID
  rs51620668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8557274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGTTTTA CGGCCCGTAA
  CCGGCCCCGG GATTCTCACC CGGGCAAATA CGTGGGAAAC TTAACTCTTT TGCACCCTAG
  ATCCAATAAG GCAAAGTGTA GTCCTTCGGC TCTCACCTAT CCCAGCATTC ATTTATTTCC
  TCTCTAGGAG ATCAGGTTGG CCACGATCGT CCACTGGGAA AGAGTCTCTC GGGTAGTCCA
  R
  GCTGGCCTGG AACTTTTCAT GGTGCTTGAT GGACACCTGA TCCTCCTGCG TCTACCTTTC
  TAAGTTTTAG GAGTCAAATT TTTTTAAAAG CGAACTTTTC AATACAAGAA ATTTGAAGAG
  GGAAAATCTG ATTGATTTAA GGCCTAAGCG CCAACTGACT TGGGGGGGGG GGGGTAGCAC
  ATGCCTTTTT AATCCCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147830567	ENSMUSSNP5736331	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51620668					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8557274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	within coordinates
Gm59849	predicted gene, 59849	within coordinates
Rr511320	regulatory region 511320	1912 bp distal
Rr511321	regulatory region 511321	1079 bp distal
Rr511322	regulatory region 511322	1789 bp distal
Rr511323	regulatory region 511323	578 bp distal
Rr511324	regulatory region 511324	1800 bp proximal
Rr511325	regulatory region 511325	1877 bp proximal
Tssr139876	transcription start site region 139876	1669 bp upstream
Tssr139877	transcription start site region 139877	515 bp upstream
Tssr139878	transcription start site region 139878	458 bp upstream
Tssr139879	transcription start site region 139879	435 bp upstream
Usp7	ubiquitin specific peptidase 7	within coordinates