rs51620703 SNP Detail

Summary

• ID
  rs51620703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACTGAG TATGAAAATC
  AGCGACGAAG CTGGAATCTG GAGGTAGCGT AACTAAAAAA ACAAAAAGTT AAGGTGAAAA
  GTTCTGTGTT CCTCTGAGCT TTTAAGTCTC ACTTTAACAG GAGTCATTTA AAAATAAAAT
  AGTTTTTCTC TGTTATTCCC ATTCTGTCAT CAAAATAGAA ACAATAGATG CCGTTTGTCA
  Y
  TCCAGCGTAG TCAATCCAGA AGCCAGCGAA GGCTAATACT GAATGTGTAG AATGAGTTCT
  TCCATATCTA GGTTATCGGC AGGCTCCACT AACTCTGATA CCTGTAAGGA AGAAGTTGGG
  AAGCAGCACG GGACCTTTCT CATACTGTTC CCTCAGTGCC AGAAGGTCTG GCATTTCAAG
  CGTGTTTTCT TCCCTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60499939	NES16521742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	T	T	T		T
ss325261875	CHEV_16_84776174	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51620703					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499939	NES16521742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	697 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139181	transcription start site region 139181	1836 bp downstream
Tssr139182	transcription start site region 139182	1784 bp downstream
Tssr139183	transcription start site region 139183	1755 bp downstream
Tssr139184	transcription start site region 139184	1732 bp downstream
Tssr139185	transcription start site region 139185	1691 bp downstream
Tssr139186	transcription start site region 139186	1635 bp downstream
Tssr139187	transcription start site region 139187	1615 bp downstream
Tssr139188	transcription start site region 139188	1597 bp downstream
Tssr139189	transcription start site region 139189	1506 bp downstream
Tssr139190	transcription start site region 139190	1490 bp downstream