rs51621322 SNP Detail

Summary

• ID
  rs51621322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37873145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATCCCC TGGAGCTGGT
  ACGAGTACCT GGGAGCTGCC AACTGTGGTG CTGGGCACTG AAGCTGGGTC CTCTGCAAGA
  ACATTGCTCC TCTTAAGCAT GCAGTCGTAT CTCCATTCCC GACTCTCTTA TTCAAACAAT
  CAAATTATAA AATTTAGTTG GTACATTAGG CATCGTAAAA GATGAACACT GAAATTTTGG
  Y
  GATGTACTAC ATGTTGTCTC CTTGCATCTT TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCAAC AGCTAATTGT TCCATGCTTG GCTCTTTTAC GATGTTGAGG TGAATGACAT
  GGGTGTTGTA ACACACCATT GCACCACTCC TGACCTTGTA ATGACGTCAG GGGGAGGCTT
  ATCCTGCTGT GGTGATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61764392	NES17699284	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51621322					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764392	NES17699284	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37873145 () rs orientation: forward

Symbol	Name	Function Class
Rr271585	regulatory region 271585	145 bp distal
Rr279067	regulatory region 279067	within coordinates
Rr283303	regulatory region 283303	1057 bp proximal
Rr388282	regulatory region 388282	1679 bp downstream