rs51621836 SNP Detail

Summary

• ID
  rs51621836
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76544780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTGGGGG AGCCATGAAG AAACTAACTA AAGGGGAGCC
  TTTGGGGACC AGGGGGAGAC AAGTCACTAT TTTGAGGGAG AAAGCTCTGG ATTGATTCTG
  M
  CAGGACACTT GAGTGTGAAC TGTCCAAGCT AAGCCTCTGG GTGTGTAGAG AGAGCCCTTA
  CAGATAGATA GCACCTTTGC TTTCAGAGTG GAAGGACTAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61288982	NES16903932	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51621836					SNP	A	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288982	NES16903932	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76544780 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr98195	transcription start site region 98195	156 bp downstream
Tssr98196	transcription start site region 98196	352 bp downstream
Tssr98197	transcription start site region 98197	545 bp downstream
Tssr98198	transcription start site region 98198	589 bp downstream
Tssr98199	transcription start site region 98199	696 bp downstream
Tssr98200	transcription start site region 98200	737 bp downstream