rs51623020 SNP Detail

Summary

• ID
  rs51623020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCCAAC ACTGGTGTCC
  AGAGCACGGC CAAATTCACA CCAAGTGCTG GATAGGAAGT GGATCAGAGG GAAAGGGCTG
  CCTGGTGTGT TTGAATGTAT TCGTTCAAAT GACACATGCT GACCCTGTAG CATAATGACA
  GGAGAGAACG CTGGAGGTGT GGCATTGTAG AGGCAGTGCG GGGCGGGGGG CAGGGAAGAG
  R
  ATGGGAGCCC AGTCCAGGCG GGAGAGGACC AGGCTTGGCT GAGTGGGAGC ACCTTGCCGC
  TCATGGTTAT GCTCAAAGCC CATCCTCTAC CAGGCAAATT GAGCTCCAGA CACCAATTCC
  CAGGGCTGGT TAGATATTCT AGAATGCAGC CCGTAGGCAG GCAGCCATTT GGTCCCATCT
  GTCAGCAGAG GCTGCCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148241892	ENSMUSSNP3953325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320608508	CHEV_2_165452316	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51623020					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468736 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	69 bp proximal
Rr569966	regulatory region 569966	1132 bp proximal
Rr569967	regulatory region 569967	1246 bp proximal