rs51626404 SNP Detail

Summary

• ID
  rs51626404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127763001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAGGAT CAAGTTATTT
  CTGTGCCGAA CGCAGGCAGA TTTTTAAGAT CTTGTCATTA TCTTTTTAAT CATACCAGTA
  TGAAAACCAT TTACAGGAGT TTATGTTAGG TGTTGTAACG GACCCAGAGA TGGTTTAAAT
  ATACACAGAC ATGGCTTTTA CCTGTAGCCA AGCACTTAGT AGGCTGAGGC AGGAGAATTG
  Y
  TATGAGTTTG ATCTAGCCTG GGCTATATAG TGAGTTCCAG GCTAACATGG GCTACAGAGT
  GAGACCTTGT CTCAAAAAAA ATTATTATCC TAAATAAAAG AATTAAGAAG TGTCTGGGGA
  GTGGGGGGCT GGACTCCAGA TGCCCCCATC TTGACACTGG ACTTGGTCAA CCTCACTTTT
  TCTTTGAAGT GGCTCATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135876656	ENSMUSSNP710121	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320958790	CHEV_3_127672270	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51626404					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127763001 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1569 bp upstream
Gm65460	predicted gene, 65460	233 bp upstream
Rr52	regulatory region 52	629 bp proximal
Rr584913	regulatory region 584913	1622 bp proximal
Rr584914	regulatory region 584914	1722 bp proximal