rs51627935 SNP Detail

Summary

• ID
  rs51627935
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183833112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGTCAG CTTCTGGGCT
  CACAGTGTGG TTACCGTGCA GTTTTAGGGT AAAGAGAGCT CCTGGAAGAA AAATCTTTAT
  GTGTTGTGAG GGGTAAACTG TCTGAACAGA TGTCCACAGG CCACCACCTG GCCTACAGTG
  TTAGTCTTCC ATTTGATGTG AGTCTCATTA ACATAGCAAT GAGTCAGGCA GTCGCCTATC
  W
  GTTCTTCCTC CTCTGGACAA TATGATCTCC ACTGTAGGTA GCTGTCAGAG GAAGCCACAT
  GGACCACTTA TCTGTCCATG TCAGTACCCT CCCAGTACTG CTTATAGGGG CAATGGAAGA
  CTGTATTTAA AATTAATAAG AATGCACAAT GGTATGGAAA TAGCGGGTAG ACAGTAAAAA
  TGAAAGTCGA ATCTTTAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352487	NES15853221	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51627935					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352487	NES15853221	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183833112 () rs orientation: forward

Symbol	Name	Function Class
Rr425178	regulatory region 425178	within coordinates