rs51633407 SNP Detail

Summary

• ID
  rs51633407
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113881721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC CCTCAGAGTA TCCTGGAGTA
  K
  CCTTCACTGG CCAAGCCTGA GGACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147245850	ENSMUSSNP1004199	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320462308	CHEV_2_113876976	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51633407					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113881721 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	760 bp upstream
Tssr19436	transcription start site region 19436	1658 bp downstream
Tssr19437	transcription start site region 19437	936 bp downstream
Tssr19438	transcription start site region 19438	820 bp downstream
Tssr19439	transcription start site region 19439	787 bp downstream
Tssr25670	transcription start site region 25670	1998 bp upstream
Tssr25671	transcription start site region 25671	1935 bp upstream
Tssr25672	transcription start site region 25672	1918 bp upstream
Tssr25673	transcription start site region 25673	1887 bp upstream
Tssr25674	transcription start site region 25674	1641 bp upstream
Tssr25675	transcription start site region 25675	1609 bp upstream
Tssr25676	transcription start site region 25676	1586 bp upstream
Tssr25677	transcription start site region 25677	1561 bp upstream
Tssr25678	transcription start site region 25678	896 bp upstream
Tssr25679	transcription start site region 25679	886 bp upstream
Tssr25680	transcription start site region 25680	875 bp upstream
Tssr25681	transcription start site region 25681	791 bp upstream
Tssr25682	transcription start site region 25682	752 bp upstream
Tssr25683	transcription start site region 25683	743 bp upstream
Tssr25684	transcription start site region 25684	625 bp upstream
Tssr25685	transcription start site region 25685	274 bp upstream
Tssr25686	transcription start site region 25686	58 bp downstream
Tssr25687	transcription start site region 25687	689 bp downstream
Tssr25688	transcription start site region 25688	753 bp downstream
Tssr25689	transcription start site region 25689	819 bp downstream
Tssr25690	transcription start site region 25690	837 bp downstream
Tssr25691	transcription start site region 25691	959 bp downstream
Tssr25692	transcription start site region 25692	1564 bp downstream