rs51633946 SNP Detail

Summary

• ID
  rs51633946
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24570510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG CTGAGAGCAG AAAGTAGCAC
  C
  TTCTCTTGGT GACAAGAGTG AGATG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351481	ENSMUSSNP6195091	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325330825	CHEV_17_24488481	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51633946					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24570510 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	487 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	468 bp upstream
Cpgi8716	CpG island 8716	within coordinates
Rr405082	regulatory region 405082	182 bp upstream
Rr523280	regulatory region 523280	518 bp distal
Rr523281	regulatory region 523281	within coordinates
Rr523282	regulatory region 523282	296 bp distal
Rr523283	regulatory region 523283	368 bp proximal
Rr523284	regulatory region 523284	521 bp proximal
Rr523285	regulatory region 523285	571 bp proximal
Rr523286	regulatory region 523286	1993 bp proximal
Tssr143021	transcription start site region 143021	401 bp upstream
Tssr143022	transcription start site region 143022	418 bp upstream
Tssr143023	transcription start site region 143023	481 bp upstream
Tssr143024	transcription start site region 143024	501 bp upstream
Tssr146725	transcription start site region 146725	472 bp upstream
Tssr146726	transcription start site region 146726	428 bp upstream