rs51634338 SNP Detail

Summary

• ID
  rs51634338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117641904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAAGGA TGGACTCTTG
  AGGGTTGAGG CTCCAGTTCA GTGGCACCGT GCCAAAGTCT GGTTCTGTCC CCAGAGCCAC
  AAACACAAAA GTCAATTTAG TTTACAGATC AAGAGCAGAA ATTGACTTGA AAAATACCTT
  GTGAGTGCAA ATTTACTGTC ATCTAAAAGC AAATTATGTG CGTTCTAAAA ATAGAAGTGT
  R
  TTCCGAAGCA CGGAAAGATG GGCCCTGAAG CTTGGCCATT CGAGGGACGC CCTTGAAGTC
  TGCTTAGACT CTTGGGTCGC TCAGCAAAGG ACAGTAAGTA AATCCATGCT TCCGAATCCA
  CCCAGGCTGC CCATTTGCAA TTGAAAACGA TGGAGTTTAG TCTTTAGGAA AAGCTGACGA
  TCCTAGAAGA GTGCTTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52226338	NES15327749	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss323499630	CHEV_10_117243055	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51634338					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226338	NES15327749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117641904 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	504 bp distal
Rr218194	regulatory region 218194	1897 bp proximal
Rr221673	regulatory region 221673	312 bp proximal
Rr225990	regulatory region 225990	904 bp distal
Rr385360	regulatory region 385360	within coordinates