rs51636078 SNP Detail

Summary

• ID
  rs51636078
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24827273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGAGGAA ATCAAATCCA GAAACCAAAT CAAATCGCAT
  GAACTTGGTT TCAGATTAAC TTGTTCTTAG ACCAGAGGGG CTTTGCGAAG CAGGACCTAG
  K
  GACTCCGAGG GAGATGCAGG GACACTTAGA AGAGGTAGTA CAGATGTGGA GGAAGGTGCT
  AAATGGTAGA TGTCATCAGG TTCAGGAGAG TGCCCCATG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148097878	ENSMUSSNP6466545	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51636078					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24827273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15616	CpG island 15616	1640 bp proximal
Gm71653	predicted gene, 71653	within coordinates
Rr608374	regulatory region 608374	1809 bp distal
Rr608375	regulatory region 608375	618 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	371 bp downstream
Tssr50356	transcription start site region 50356	384 bp downstream
Tssr50357	transcription start site region 50357	1197 bp downstream