rs51639699 SNP Detail

Summary

• ID
  rs51639699
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76846153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGTTTT TTGAGACAGG
  GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCACTCTG TAGATCAGGC TGGCCTCAAA
  CTCAGAAATC TGCCTGCCTC TGCCTCTGGA GTGCTGGGAT TAAAGGCGTG CGACACCAAC
  GCCCGGCTTG GGATCTTCTT TTCTGTTCCT TCCTGGCTGG CAGCTGTCAC CCTGCTCTGG
  K
  CATTGTAGAT GAACCTGTGC TTCCCTTCGA TTGTGGAGGT CAAAGGACAG AGGGACTGTT
  TGGATCCTTT ACTGTGTCTA ATTACTCTTA GCACTGCCCG CATTGTGTGG GTCAGTACAT
  CATCTCTGTT CATAGTTGTA TAGCATTTCA GTGTCTGAGT GAGCCCAGCC TACGTGTTTA
  TTTACTTGGG GAGAGTTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376435	NES15271978	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51639699					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376435	NES15271978	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76846153 () rs orientation: forward

Symbol	Name	Function Class
Gm3137	predicted gene, 3137	1182 bp downstream
Gm10787	predicted gene 10787	1676 bp upstream
Gm35721	predicted gene, 35721	1696 bp upstream
Rr384954	regulatory region 384954	1775 bp downstream
Rr434363	regulatory region 434363	1888 bp distal
Rr434364	regulatory region 434364	1425 bp distal
Rr434365	regulatory region 434365	1980 bp proximal
Tssr3258	transcription start site region 3258	1909 bp downstream
Tssr94202	transcription start site region 94202	1665 bp upstream
Tssr98214	transcription start site region 98214	1997 bp upstream